Mgr. Naděžda Špačková, Ph.D.

2003

• Conformational Flexibility of DNA sequences studied by Advanced Molecular Mechanics and Dynamics Tools

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠPONER Jiří KOČA Jaroslav

  Article in Proceedings

  Book of Abstracts, year: 2003

• Formation Pathways of a Guanine-Quadruplex DNA Revealed by Molecular Dynamics and Thermodynamics Analysis of the Substates

  ŠTEFL Richard CHEATHAM Thomas E. ŠPAČKOVÁ Naděžda FADRNÁ Eva BERGER Imre KOČA Jaroslav ŠPONER Jiří

  Article in Periodical

  Biophysical Journal, year: 2003, volume: 85, edition: 3

• Molecular Dynamics of Guanine Quadruplex Molecules

  ŠPAČKOVÁ Naděžda ŠTEFL Richard BERGER Imre FADRNÁ Eva KOČA Jaroslav CHEATHAM III T.E. ŠPONER Jiří

  Article in Proceedings

  Book of Abstracts, year: 2003

• Molecular dynamics simulations of RNA kissing loop motifs reveal structural dynamics and formation of cation-binding pockets

  RÉBLOVÁ Kamila ŠPAČKOVÁ Naděžda ŠPONER Judit KOČA Jaroslav ŠPONER Jiři

  Article in Periodical

  Nucleic Acids Research, year: 2003, volume: 31, edition: 23

• Non-Watson-Crick Base Pairing and Hydration in RNA motifs: Molecular Dynamics of 5S rRNA Loop E

  RÉBLOVÁ Kamila ŠPAČKOVÁ Naděžda KOČA Jaroslav LEONTIS Neocles ŠPONER Jiří

  Article in Proceedings

  Journal of Biomolecular Structure and Dynamics, year: 2003

• Non-Watson-Crick Basepairing and Hydration in RNA Motifs:

  RÉBLOVÁ Kamila SPACKOVÁ Nadezda STEFL Richard CSASZAR Kristina KOCA Jaroslav LEONTIS Neocles SPONER Jiri

  Article in Periodical

  Biophysical Journal, year: 2003, volume: 84, edition: 6

• Structure and Dynamics of RNA K-turn Motifs

  RÁZGA Filip ŠPAČKOVÁ Naděžda RÉBLOVÁ Kamila KOČA Jaroslav ŠPONER Jiří LEONTIS Neocles, B.

  Article in Proceedings

  RNA klub, year: 2003

2002

• Computer modelling of DNA quadruplex conformational behavior

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠPONER Jiří KOČA Jaroslav

  Article in Proceedings

  Chemické Listy, year: 2002

• DNA quadruplexes with lateral loops - molecular modelling study of conformational behavior

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠPONER Jiří KOČA Jaroslav

  Article in Proceedings

  Chemometrics VI, year: 2002

• Molecular dynamics of the 5S rRNA loop E

  RÉBLOVÁ Kamila ŠPAČKOVÁ Naděžda ŠTEFL Richard CSASZAR Kristina KOČA Jaroslav LEONTIS Neocles ŠPONER Jiří

  Article in Proceedings

  Chemometrics, year: 2002